BitSeq-package | Bayesian Inference of Transcripts from Sequencing data |
BitSeq | Bayesian Inference of Transcripts from Sequencing data |
estimateDE | Estimate condition mean expression and calculate Probability of Positive Log Ratio(PPLR) |
estimateExpression | Estimate expression of transcripts |
estimateExpressionLegacy | Estimate expression of transcripts |
estimateHyperPar | Estimate hyperparameters for DE model using expression samples and joint mean expression |
estimateVBExpression | Estimate expression of transcripts using VB |
getDE | Estimate Probability of Positive Log Ratio |
getExpression | Estimate transcript expression |
getGeneExpression | Calculate gene expression or relative within gene expression |
getMeanVariance | Calculate mean and variance of expression samples |
getWithinGeneExpression | Calculate gene expression or relative within gene expression |
loadSamples | Loading and saving expression samples |
parseAlignment | Compute probabilities of alignments |
tri.file.hasGeneNames | Manage file containing information about transcript reference |
tri.file.setGeneNames | Manage file containing information about transcript reference |
tri.hasGeneNames | Manage information about transcript reference |
tri.load | Manage information about transcript reference |
tri.save | Manage information about transcript reference |
tri.setGeneNames | Manage information about transcript reference |
writeSamples | Loading and saving expression samples |